Profile information

Prof. Dr.  Sophia Rudorf

https://orcid.org/0000-0001-7653-3733
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Publications

  1. 2024
  2. Published

    Synonymous rpsH variants: the common denominator in Escherichia coli adapting to ionizing radiation

    Stemwedel, K., Haase, N., Christ, S., Bogdanova, N. & Rudorf, S., Sept 2024, In: NAR Genomics and Bioinformatics. 6, 3, lqae110.

    Research output: Contribution to journal › Article › Research › peer review

  3. Published

    Decomposing bulk signals to reveal hidden information in processive enzyme reactions: A case study in mRNA translation

    Haase, N., Holtkamp, W., Christ, S., Heinemann, D., Rodnina, M. V. & Rudorf, S., 5 Mar 2024, In: PLoS Computational Biology. 20, 3, 1011918.

    Research output: Contribution to journal › Article › Research › peer review

  4. Published

    Utilizing high-resolution ribosome profiling for the global investigation of gene expression in Chlamydomonas

    Gotsmann, V. L., Ting, M. K. Y., Haase, N., Rudorf, S., Zoschke, R. & Willmund, F., 26 Feb 2024, In: Plant Journal. 117, 5, p. 1614-1634 21 p.

    Research output: Contribution to journal › Article › Research › peer review

  5. 2023
  6. Published

    Computational analysis of protein synthesis, diffusion, and binding in compartmental biochips

    Förste, S., Vonshak, O., Daube, S. S., Bar-Ziv, R. H., Lipowsky, R. & Rudorf, S., 30 Nov 2023, In: Microbial cell factories. 22, 1, 244.

    Research output: Contribution to journal › Article › Research › peer review

  7. Published

    Dominance analysis of competing protein assembly pathways

    Lankeit, J., Förste, S. & Rudorf, S., 24 Feb 2023, In: PLOS ONE. 18, 2, e0281964.

    Research output: Contribution to journal › Article › Research › peer review

  8. 2022

  9. Tailoring Codon Usage to the Underlying Biology for Protein Expression Optimization

    Alirezaeizanjani, Z., Trösemeier, J. H., Kamp, C. & Rudorf, S., 28 Jan 2022, Insoluble Proteins: Methods and Protocols. Garcia Fruitos, E. & Aris Giralt, A. (eds.). New York, p. 85-92 8 p. (Methods in Molecular Biology; vol. 2406).

    Research output: Chapter in book/report/conference proceeding › Contribution to book/anthology › Research

  10. 2020

  11. Programming multi-protein assembly by gene-brush patterns and two-dimensional compartment geometry

    Vonshak, O., Divon, Y., Förste, S., Garenne, D., Noireaux, V., Lipowsky, R., Rudorf, S., Daube, S. S. & Bar-Ziv, R. H., Sept 2020, In: Nature nanotechnology. 15, 9, p. 783-791 9 p.

    Research output: Contribution to journal › Article › Research › peer review

  12. Modellentwicklung und maschinelles Lernen erhöhen die Proteinausbeute

    Trösemeier, J. H., Rudorf, S., Lößner, H., Hofner, B. & Kamp, C., May 2020, In: BioSpektrum. 26, 3, p. 262-264 3 p.

    Research output: Contribution to journal › Review article › Research › peer review

  13. 2019

  14. Efficiency of protein synthesis inhibition depends on tRNA and codon compositions

    Rudorf, S., 1 Aug 2019, In: PLoS Computational Biology. 15, 8, 14 p., e1006979.

    Research output: Contribution to journal › Article › Research › peer review

  15. Optimizing the dynamics of protein expression

    Trösemeier, J., Rudorf, S., Loessner, H., Hofner, B., Reuter, A., Schulenborg, T., Koch, I., Bekeredjian-Ding, I., Lipowsky, R. & Kamp, C., 17 May 2019, In: Scientific reports. 9, 1, 15 p., 7511.

    Research output: Contribution to journal › Article › Research › peer review

  16. 2018

  17. Decomposition of time-dependent fluorescence signals reveals codon-specific kinetics of protein synthesis

    Haase, N., Holtkamp, W., Lipowsky, R., Rodnina, M. & Rudorf, S., 14 Dec 2018, In: Nucleic acids research. 46, 22, 7 p., e130.

    Research output: Contribution to journal › Article › Research › peer review

  18. 2015

  19. Protein Synthesis in E. coli: Dependence of Codon-Specific Elongation on tRNA Concentration and Codon Usage

    Rudorf, S. & Lipowsky, R., Aug 2015, In: PLOS ONE. 10, 8, 22 p., e0134994.

    Research output: Contribution to journal › Article › Research › peer review

  20. 2014

  21. Deducing the Kinetics of Protein Synthesis In Vivo from the Transition Rates Measured In Vitro

    Rudorf, S., Thommen, M., Rodnina, M. V. & Lipowsky, R., 30 Oct 2014, In: PLoS Computational Biology. 10, 10, 17 p., e1003909.

    Research output: Contribution to journal › Article › Research › peer review

  22. Protein Synthesis by Ribosomes: Mapping In Vitro onto In Vivo Rates

    Rudorf, S., Thommen, M., Rodnina, M. V. & Lipowsky, R., 28 Jan 2014, In: Biophysical journal. 106, 2, 240a.

    Research output: Contribution to journal › Article › Research › peer review

  23. 2012

  24. Self-Assembly of Stable Monomolecular Nucleic Acid Lipid Particles with a Size of 30 nm

    Rudorf, S. & Rädler, J. O., 3 Jul 2012, In: Journal of the American Chemical Society. 134, 28, p. 11652–11658

    Research output: Contribution to journal › Article › Research › peer review

  25. Transient Phenomena in Gene Expression after Induction of Transcription

    Deneke, C., Rudorf, S. & Valleriani, A., 23 Apr 2012, In: PLOS ONE. 7, 4, e35044.

    Research output: Contribution to journal › Article › Research › peer review