The human liver matrisome: Proteomic analysis of native and fibrotic human liver extracellular matrices for organ engineering approaches

Research output: Contribution to journalArticleResearchpeer review

Authors

  • Assal Daneshgar
  • Oliver Klein
  • Grit Nebrich
  • Marie Weinhart
  • Peter Tang
  • Alexander Arnold
  • Imran Ullah
  • Julian Pohl
  • Simon Moosburner
  • Nathanael Raschzok
  • Benjamin Strücker
  • Marcus Bahra
  • Johann Pratschke
  • Igor M. Sauer
  • Karl H. Hillebrandt

Research Organisations

External Research Organisations

  • Freie Universität Berlin (FU Berlin)
  • University of Münster
  • Berlin Institute of Health (BIH)
  • Charité - Universitätsmedizin Berlin
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Details

Original languageEnglish
Article number120247
JournalBiomaterials
Volume257
Early online date24 Jul 2020
Publication statusPublished - Oct 2020

Abstract

The production of biomaterials that endow significant morphogenic and microenvironmental cues for the constitution of cell integration and regeneration remains a key challenge in the successful implementation of functional organ replacements. Despite the vast development in the production of biological and architecturally native matrices, the complex compositions and pivotal figures by which the human matrisome mediates many of its essential functions are yet to be defined. Here we present a thorough analysis of the native human liver proteomic landscape using decellularization and defatting protocols to create extracellular matrix scaffolds of natural origin that can further be used in both bottom-up and top-down approaches in tissue engineering based organ replacements. Furthermore, by analyzing human liver extracellular matrices in different stages of fibrosis and cirrhosis, we have identified distinct attributes of these tissues that could potentially be exploited therapeutically and thus require further investigation. The general experimental pipeline presented in this study is applicable to any type of tissue and can be widely used for different approaches in regenerative medicine and in the construction of novel biomaterials for organ engineering approaches.

Keywords

    Acellular tissue scaffold, Bioink, Human liver matrisome, Liver fibrosis, Organ engineering, Proteomics

ASJC Scopus subject areas

Sustainable Development Goals

Cite this

The human liver matrisome: Proteomic analysis of native and fibrotic human liver extracellular matrices for organ engineering approaches. / Daneshgar, Assal; Klein, Oliver; Nebrich, Grit et al.
In: Biomaterials, Vol. 257, 120247, 10.2020.

Research output: Contribution to journalArticleResearchpeer review

Daneshgar, A, Klein, O, Nebrich, G, Weinhart, M, Tang, P, Arnold, A, Ullah, I, Pohl, J, Moosburner, S, Raschzok, N, Strücker, B, Bahra, M, Pratschke, J, Sauer, IM & Hillebrandt, KH 2020, 'The human liver matrisome: Proteomic analysis of native and fibrotic human liver extracellular matrices for organ engineering approaches', Biomaterials, vol. 257, 120247. https://doi.org/10.1016/j.biomaterials.2020.120247
Daneshgar, A., Klein, O., Nebrich, G., Weinhart, M., Tang, P., Arnold, A., Ullah, I., Pohl, J., Moosburner, S., Raschzok, N., Strücker, B., Bahra, M., Pratschke, J., Sauer, I. M., & Hillebrandt, K. H. (2020). The human liver matrisome: Proteomic analysis of native and fibrotic human liver extracellular matrices for organ engineering approaches. Biomaterials, 257, Article 120247. https://doi.org/10.1016/j.biomaterials.2020.120247
Daneshgar A, Klein O, Nebrich G, Weinhart M, Tang P, Arnold A et al. The human liver matrisome: Proteomic analysis of native and fibrotic human liver extracellular matrices for organ engineering approaches. Biomaterials. 2020 Oct;257:120247. Epub 2020 Jul 24. doi: 10.1016/j.biomaterials.2020.120247
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title = "The human liver matrisome: Proteomic analysis of native and fibrotic human liver extracellular matrices for organ engineering approaches",
abstract = "The production of biomaterials that endow significant morphogenic and microenvironmental cues for the constitution of cell integration and regeneration remains a key challenge in the successful implementation of functional organ replacements. Despite the vast development in the production of biological and architecturally native matrices, the complex compositions and pivotal figures by which the human matrisome mediates many of its essential functions are yet to be defined. Here we present a thorough analysis of the native human liver proteomic landscape using decellularization and defatting protocols to create extracellular matrix scaffolds of natural origin that can further be used in both bottom-up and top-down approaches in tissue engineering based organ replacements. Furthermore, by analyzing human liver extracellular matrices in different stages of fibrosis and cirrhosis, we have identified distinct attributes of these tissues that could potentially be exploited therapeutically and thus require further investigation. The general experimental pipeline presented in this study is applicable to any type of tissue and can be widely used for different approaches in regenerative medicine and in the construction of novel biomaterials for organ engineering approaches.",
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author = "Assal Daneshgar and Oliver Klein and Grit Nebrich and Marie Weinhart and Peter Tang and Alexander Arnold and Imran Ullah and Julian Pohl and Simon Moosburner and Nathanael Raschzok and Benjamin Str{\"u}cker and Marcus Bahra and Johann Pratschke and Sauer, {Igor M.} and Hillebrandt, {Karl H.}",
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Download

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T2 - Proteomic analysis of native and fibrotic human liver extracellular matrices for organ engineering approaches

AU - Daneshgar, Assal

AU - Klein, Oliver

AU - Nebrich, Grit

AU - Weinhart, Marie

AU - Tang, Peter

AU - Arnold, Alexander

AU - Ullah, Imran

AU - Pohl, Julian

AU - Moosburner, Simon

AU - Raschzok, Nathanael

AU - Strücker, Benjamin

AU - Bahra, Marcus

AU - Pratschke, Johann

AU - Sauer, Igor M.

AU - Hillebrandt, Karl H.

N1 - Funding Information: The authors thank Dr. A. Reutzel-Selke for assistance with statistical analysis and Dr. S.J. Wowro and Dr. G. Tong for assistance with Western blot analysis. We further thank the Einstein Center for Regenerative Therapies for funding this project. Dr. K.H. Hillebrandt is participant in the BIH – Charité Junior Clinician Scientist Program funded by the Charité – Universitätsmedizin Berlin and the Berlin Institute of Health. PD Dr. B. Strücker and PD Dr. N. Raschzok were participants in the BIH – Charité Clinician Scientist Program funded by the Charité – Universitätsmedizin and the Berlin Institute of Health. The authors acknowledge the support of the Cluster of Excellence Matters of Activity. Image Space Material funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy – EXC 2025.

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N2 - The production of biomaterials that endow significant morphogenic and microenvironmental cues for the constitution of cell integration and regeneration remains a key challenge in the successful implementation of functional organ replacements. Despite the vast development in the production of biological and architecturally native matrices, the complex compositions and pivotal figures by which the human matrisome mediates many of its essential functions are yet to be defined. Here we present a thorough analysis of the native human liver proteomic landscape using decellularization and defatting protocols to create extracellular matrix scaffolds of natural origin that can further be used in both bottom-up and top-down approaches in tissue engineering based organ replacements. Furthermore, by analyzing human liver extracellular matrices in different stages of fibrosis and cirrhosis, we have identified distinct attributes of these tissues that could potentially be exploited therapeutically and thus require further investigation. The general experimental pipeline presented in this study is applicable to any type of tissue and can be widely used for different approaches in regenerative medicine and in the construction of novel biomaterials for organ engineering approaches.

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