The effect of substrate concentration on the methane-driven interaction network

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Authors

  • Tanja Heffner
  • Lucas W. Mendes
  • Thomas Kaupper
  • Daria Frohloff
  • Marcus A. Horn
  • Adrian Ho

Research Organisations

External Research Organisations

  • Universidade de Sao Paulo
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Details

Original languageEnglish
Article number103665
JournalEuropean journal of soil biology
Volume122
Early online date27 Aug 2024
Publication statusPublished - Sept 2024

Abstract

Methane, the primary substrate for aerobic methanotrophs, regulates the rate of methanotrophic activity and shapes the composition of the methane-oxidizing community. Given that methane-derived carbon may fuel the food web in the soil, methane availability can potentially be a key determinant, structuring the network of the interacting methane-oxidizing community. Here, we determined the response of the methane-driven interaction network to different methane concentrations (∼1.5 %v/v, 3 %v/v, and 7 %v/v), indicative of different levels of energy flow through the soil food web, using a stable isotope probing approach with 13C-methane coupled to a co-occurrence network analysis in a microcosm study. The accumulated 13C-atom fraction in the total carbon content increased from 1.08 % (background level) to an average of 7.2 % in the incubation under 7 %v/v methane, indicating that the carbon-flow via the methanotrophs can significantly contribute to the total carbon in the rice paddy soil. The 13C-enriched 16 S rRNA gene sequencing analysis revealed the predominance of gammaproteobacterial methanotrophs and Methylocystis. The composition of the actively growing (13C-labelled) bacterial community was dissimilar in the incubation under ∼3 %v/v than under 1.5 %v/v and 7 %v/v methane. This was also reflected in the co-occurrence network analysis, where the topological properties indicated a more complex and connected network in the incubation under 3 %v/v methane. It thus appears that moderate methane concentrations fostered closer associations among members of the methane-oxidizing community. Overall, our research findings showed that the methanotrophs can contribute to the total soil carbon, and methane concentrations not only shifted the bacterial community, including the methanotrophic composition, but also affected bacterial interactions.

Keywords

    Co-occurrence network, Methane-based foodweb, Methylocystis, Paddy soil, Stable isotope probing

ASJC Scopus subject areas

Cite this

The effect of substrate concentration on the methane-driven interaction network. / Heffner, Tanja; Mendes, Lucas W.; Kaupper, Thomas et al.
In: European journal of soil biology, Vol. 122, 103665, 09.2024.

Research output: Contribution to journalArticleResearchpeer review

Heffner T, Mendes LW, Kaupper T, Frohloff D, Horn MA, Ho A. The effect of substrate concentration on the methane-driven interaction network. European journal of soil biology. 2024 Sept;122:103665. Epub 2024 Aug 27. doi: 10.1016/j.ejsobi.2024.103665
Heffner, Tanja ; Mendes, Lucas W. ; Kaupper, Thomas et al. / The effect of substrate concentration on the methane-driven interaction network. In: European journal of soil biology. 2024 ; Vol. 122.
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abstract = "Methane, the primary substrate for aerobic methanotrophs, regulates the rate of methanotrophic activity and shapes the composition of the methane-oxidizing community. Given that methane-derived carbon may fuel the food web in the soil, methane availability can potentially be a key determinant, structuring the network of the interacting methane-oxidizing community. Here, we determined the response of the methane-driven interaction network to different methane concentrations (∼1.5 %v/v, 3 %v/v, and 7 %v/v), indicative of different levels of energy flow through the soil food web, using a stable isotope probing approach with 13C-methane coupled to a co-occurrence network analysis in a microcosm study. The accumulated 13C-atom fraction in the total carbon content increased from 1.08 % (background level) to an average of 7.2 % in the incubation under 7 %v/v methane, indicating that the carbon-flow via the methanotrophs can significantly contribute to the total carbon in the rice paddy soil. The 13C-enriched 16 S rRNA gene sequencing analysis revealed the predominance of gammaproteobacterial methanotrophs and Methylocystis. The composition of the actively growing (13C-labelled) bacterial community was dissimilar in the incubation under ∼3 %v/v than under 1.5 %v/v and 7 %v/v methane. This was also reflected in the co-occurrence network analysis, where the topological properties indicated a more complex and connected network in the incubation under 3 %v/v methane. It thus appears that moderate methane concentrations fostered closer associations among members of the methane-oxidizing community. Overall, our research findings showed that the methanotrophs can contribute to the total soil carbon, and methane concentrations not only shifted the bacterial community, including the methanotrophic composition, but also affected bacterial interactions.",
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T1 - The effect of substrate concentration on the methane-driven interaction network

AU - Heffner, Tanja

AU - Mendes, Lucas W.

AU - Kaupper, Thomas

AU - Frohloff, Daria

AU - Horn, Marcus A.

AU - Ho, Adrian

N1 - Publisher Copyright: © 2024 The Authors

PY - 2024/9

Y1 - 2024/9

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KW - Methane-based foodweb

KW - Methylocystis

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DO - 10.1016/j.ejsobi.2024.103665

M3 - Article

AN - SCOPUS:85201863393

VL - 122

JO - European journal of soil biology

JF - European journal of soil biology

SN - 1164-5563

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ER -

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