Details
| Original language | English |
|---|---|
| Title of host publication | Omics in Horticultural Crops |
| Editors | Gyana Ranjan Rout |
| Publisher | Academic Press Inc. |
| Pages | 1-14 |
| Number of pages | 14 |
| ISBN (electronic) | 9780323899055 |
| ISBN (print) | 9780323899130 |
| Publication status | Published - 2022 |
Abstract
Keywords
- Genomics, Marker-assisted selection, Multiomics integration, NGS technologies, Phenomics, Proteomics, RNA-Seq, SNP array, SNP marker, Transcriptomics
ASJC Scopus subject areas
- Agricultural and Biological Sciences(all)
- General Agricultural and Biological Sciences
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Omics in Horticultural Crops. ed. / Gyana Ranjan Rout. Academic Press Inc., 2022. p. 1-14.
Research output: Chapter in book/report/conference proceeding › Contribution to book/anthology › Research › peer review
}
TY - CHAP
T1 - State of the art of omics technologies in horticultural crops
AU - Debener, Thomas
PY - 2022
Y1 - 2022
N2 - Horticultural crops display an extraordinary diversity in species, which corresponds to different levels of application of omics technologies. Omics technologies were adapted early in major fruit and vegetable crops. Here vast resources as several sequenced genomes per genus/species, SNP chips as well as vast transcriptomic resources are available and already in use in commercial breeding programs. In contrast, ornamentals representing the most diverse group of horticultural crops are rarely represented among species with sequenced genomes. However, for major species of fruit, vegetable, and ornamental crops, sequenced genomes and transcriptomic and proteomic resources are available, and new resources are added with increasing speed. In addition, numerous metabolomics studies have been published, and recently, phenotyping protocols supported by machine learning analysis tools complement the “breeders toolbox.” In this overview, a focus will be laid on genomic, transcriptomic, and high-throughput marker analysis in major horticultural crops available via public databases.
AB - Horticultural crops display an extraordinary diversity in species, which corresponds to different levels of application of omics technologies. Omics technologies were adapted early in major fruit and vegetable crops. Here vast resources as several sequenced genomes per genus/species, SNP chips as well as vast transcriptomic resources are available and already in use in commercial breeding programs. In contrast, ornamentals representing the most diverse group of horticultural crops are rarely represented among species with sequenced genomes. However, for major species of fruit, vegetable, and ornamental crops, sequenced genomes and transcriptomic and proteomic resources are available, and new resources are added with increasing speed. In addition, numerous metabolomics studies have been published, and recently, phenotyping protocols supported by machine learning analysis tools complement the “breeders toolbox.” In this overview, a focus will be laid on genomic, transcriptomic, and high-throughput marker analysis in major horticultural crops available via public databases.
KW - Genomics
KW - Marker-assisted selection
KW - Multiomics integration
KW - NGS technologies
KW - Phenomics
KW - Proteomics
KW - RNA-Seq
KW - SNP array
KW - SNP marker
KW - Transcriptomics
UR - http://www.scopus.com/inward/record.url?scp=85143296312&partnerID=8YFLogxK
U2 - 10.1016/B978-0-323-89905-5.00016-1
DO - 10.1016/B978-0-323-89905-5.00016-1
M3 - Contribution to book/anthology
SN - 9780323899130
SP - 1
EP - 14
BT - Omics in Horticultural Crops
A2 - Rout, Gyana Ranjan
PB - Academic Press Inc.
ER -