Enhanced soil quality after forest conversion to vegetable cropland and tea plantations has contrasting effects on soil microbial structure and functions

Research output: Contribution to journalArticleResearchpeer review

Authors

  • Lichao Fan
  • Guodong Shao
  • Yinghua Pang
  • Hongcui Dai
  • Lan Zhang
  • Peng Yan
  • Zhenhao Zou
  • Zheng Zhang
  • Jianchu Xu
  • Kazem Zamanian
  • Maxim Dorodnikov
  • Xin Li
  • Heng Gui
  • Wenyan Han

External Research Organisations

  • Chinese Academy of Agricultural Sciences
  • University of Göttingen
  • Bureau of Agriculture and Rural Affairs of the Yuhang District
  • Shandong Academy of Agricultural Sciences
  • Kunming Institute of Botany Chinese Academy of Sciences
  • Nanjing University of Information Science and Technology
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Details

Original languageEnglish
Article number106029
JournalCATENA
Volume211
Publication statusPublished - Apr 2022
Externally publishedYes

Abstract

Land-use changes could potentially exert a strong influence on soil quality and soil microbial communities. Moreover, microbial taxa are also important drivers of soil ecological functions. However, the linkage between soil quality and soil microbial communities is in need of deeper understanding. Here, we examined the effects of soil fertility quality on microbial community structure that identified by pyrosequencing and functions that predicted by the FAPROTAX functional annotations dataset after forest conversion to vegetable cropland and tea plantations. Soil quality index was significantly increased after natural forest (0.2) conversion to vegetable cropland (0.7) and tea plantations (0.3–0.6). Soil bacterial beta diversity significantly correlated to soil quality index, but the sensitivity of individual microbial groups varied in response to changes in soil quality. Higher soil quality promoted bacterial diversity in vegetable cropland but decreased it in tea plantations, which implied soil quality was a structural factor in bacterial community composition but had contrasting effects for croplands versus plantations. Agricultural management played a negative role in maintaining microbial interactions, as identified by the network analysis, and furthermore the analysis revealed key functions of the microbial communities. After land-use change, the abundance (e.g., level, intensity) of microbial groups involved in N-cycling increased in tea plantations but decreased in vegetable cropland. The abundance of microbes involved in C-cycling featured an opposite trend. Higher level of N-fixation in tea plantations but the higher abundance of N-oxidation in vegetable cropland was demonstrated. Higher abundance of ammonia-oxidizing bacteria (8.5 × 104 vs. 0.9–2.4 × 104 copies) and ammonia-oxidizing archaea (3.0 × 105 vs. 0.5–1.0 × 105 copies) as identified by qPCR in cropland than that in plantations corroborated the FAPROTAX prediction. Therefore, the key taxa of soil microbial communities and microbial functions were largely dependent on changes in soil quality and determined responses to specific agricultural management.

Keywords

    Agricultural management, C and N cycling, Co-occurrence network, Fertility, Land-use change, Microbial diversity, Soil quality

ASJC Scopus subject areas

Sustainable Development Goals

Cite this

Enhanced soil quality after forest conversion to vegetable cropland and tea plantations has contrasting effects on soil microbial structure and functions. / Fan, Lichao; Shao, Guodong; Pang, Yinghua et al.
In: CATENA, Vol. 211, 106029, 04.2022.

Research output: Contribution to journalArticleResearchpeer review

Fan, L, Shao, G, Pang, Y, Dai, H, Zhang, L, Yan, P, Zou, Z, Zhang, Z, Xu, J, Zamanian, K, Dorodnikov, M, Li, X, Gui, H & Han, W 2022, 'Enhanced soil quality after forest conversion to vegetable cropland and tea plantations has contrasting effects on soil microbial structure and functions', CATENA, vol. 211, 106029. https://doi.org/10.1016/j.catena.2022.106029
Fan, L., Shao, G., Pang, Y., Dai, H., Zhang, L., Yan, P., Zou, Z., Zhang, Z., Xu, J., Zamanian, K., Dorodnikov, M., Li, X., Gui, H., & Han, W. (2022). Enhanced soil quality after forest conversion to vegetable cropland and tea plantations has contrasting effects on soil microbial structure and functions. CATENA, 211, Article 106029. https://doi.org/10.1016/j.catena.2022.106029
Fan L, Shao G, Pang Y, Dai H, Zhang L, Yan P et al. Enhanced soil quality after forest conversion to vegetable cropland and tea plantations has contrasting effects on soil microbial structure and functions. CATENA. 2022 Apr;211:106029. doi: 10.1016/j.catena.2022.106029
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title = "Enhanced soil quality after forest conversion to vegetable cropland and tea plantations has contrasting effects on soil microbial structure and functions",
abstract = "Land-use changes could potentially exert a strong influence on soil quality and soil microbial communities. Moreover, microbial taxa are also important drivers of soil ecological functions. However, the linkage between soil quality and soil microbial communities is in need of deeper understanding. Here, we examined the effects of soil fertility quality on microbial community structure that identified by pyrosequencing and functions that predicted by the FAPROTAX functional annotations dataset after forest conversion to vegetable cropland and tea plantations. Soil quality index was significantly increased after natural forest (0.2) conversion to vegetable cropland (0.7) and tea plantations (0.3–0.6). Soil bacterial beta diversity significantly correlated to soil quality index, but the sensitivity of individual microbial groups varied in response to changes in soil quality. Higher soil quality promoted bacterial diversity in vegetable cropland but decreased it in tea plantations, which implied soil quality was a structural factor in bacterial community composition but had contrasting effects for croplands versus plantations. Agricultural management played a negative role in maintaining microbial interactions, as identified by the network analysis, and furthermore the analysis revealed key functions of the microbial communities. After land-use change, the abundance (e.g., level, intensity) of microbial groups involved in N-cycling increased in tea plantations but decreased in vegetable cropland. The abundance of microbes involved in C-cycling featured an opposite trend. Higher level of N-fixation in tea plantations but the higher abundance of N-oxidation in vegetable cropland was demonstrated. Higher abundance of ammonia-oxidizing bacteria (8.5 × 104 vs. 0.9–2.4 × 104 copies) and ammonia-oxidizing archaea (3.0 × 105 vs. 0.5–1.0 × 105 copies) as identified by qPCR in cropland than that in plantations corroborated the FAPROTAX prediction. Therefore, the key taxa of soil microbial communities and microbial functions were largely dependent on changes in soil quality and determined responses to specific agricultural management.",
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author = "Lichao Fan and Guodong Shao and Yinghua Pang and Hongcui Dai and Lan Zhang and Peng Yan and Zhenhao Zou and Zheng Zhang and Jianchu Xu and Kazem Zamanian and Maxim Dorodnikov and Xin Li and Heng Gui and Wenyan Han",
note = "Funding information: This research was supported by the National Key R&D Program of China (2017YFE0107500). Heng Gui would like to thank the support from the National Natural Science of China (NSFC Grant number: 32001296). Kazem Zamanian would like to thank the Research Fund for International Young Scientists of National Natural Science of China to K.Z. (Grant number: 42050410320). Funding for study abroad program by the government of Shandong Province for financial support for Dr. Hongcui Dai",
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Download

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T1 - Enhanced soil quality after forest conversion to vegetable cropland and tea plantations has contrasting effects on soil microbial structure and functions

AU - Fan, Lichao

AU - Shao, Guodong

AU - Pang, Yinghua

AU - Dai, Hongcui

AU - Zhang, Lan

AU - Yan, Peng

AU - Zou, Zhenhao

AU - Zhang, Zheng

AU - Xu, Jianchu

AU - Zamanian, Kazem

AU - Dorodnikov, Maxim

AU - Li, Xin

AU - Gui, Heng

AU - Han, Wenyan

N1 - Funding information: This research was supported by the National Key R&D Program of China (2017YFE0107500). Heng Gui would like to thank the support from the National Natural Science of China (NSFC Grant number: 32001296). Kazem Zamanian would like to thank the Research Fund for International Young Scientists of National Natural Science of China to K.Z. (Grant number: 42050410320). Funding for study abroad program by the government of Shandong Province for financial support for Dr. Hongcui Dai

PY - 2022/4

Y1 - 2022/4

N2 - Land-use changes could potentially exert a strong influence on soil quality and soil microbial communities. Moreover, microbial taxa are also important drivers of soil ecological functions. However, the linkage between soil quality and soil microbial communities is in need of deeper understanding. Here, we examined the effects of soil fertility quality on microbial community structure that identified by pyrosequencing and functions that predicted by the FAPROTAX functional annotations dataset after forest conversion to vegetable cropland and tea plantations. Soil quality index was significantly increased after natural forest (0.2) conversion to vegetable cropland (0.7) and tea plantations (0.3–0.6). Soil bacterial beta diversity significantly correlated to soil quality index, but the sensitivity of individual microbial groups varied in response to changes in soil quality. Higher soil quality promoted bacterial diversity in vegetable cropland but decreased it in tea plantations, which implied soil quality was a structural factor in bacterial community composition but had contrasting effects for croplands versus plantations. Agricultural management played a negative role in maintaining microbial interactions, as identified by the network analysis, and furthermore the analysis revealed key functions of the microbial communities. After land-use change, the abundance (e.g., level, intensity) of microbial groups involved in N-cycling increased in tea plantations but decreased in vegetable cropland. The abundance of microbes involved in C-cycling featured an opposite trend. Higher level of N-fixation in tea plantations but the higher abundance of N-oxidation in vegetable cropland was demonstrated. Higher abundance of ammonia-oxidizing bacteria (8.5 × 104 vs. 0.9–2.4 × 104 copies) and ammonia-oxidizing archaea (3.0 × 105 vs. 0.5–1.0 × 105 copies) as identified by qPCR in cropland than that in plantations corroborated the FAPROTAX prediction. Therefore, the key taxa of soil microbial communities and microbial functions were largely dependent on changes in soil quality and determined responses to specific agricultural management.

AB - Land-use changes could potentially exert a strong influence on soil quality and soil microbial communities. Moreover, microbial taxa are also important drivers of soil ecological functions. However, the linkage between soil quality and soil microbial communities is in need of deeper understanding. Here, we examined the effects of soil fertility quality on microbial community structure that identified by pyrosequencing and functions that predicted by the FAPROTAX functional annotations dataset after forest conversion to vegetable cropland and tea plantations. Soil quality index was significantly increased after natural forest (0.2) conversion to vegetable cropland (0.7) and tea plantations (0.3–0.6). Soil bacterial beta diversity significantly correlated to soil quality index, but the sensitivity of individual microbial groups varied in response to changes in soil quality. Higher soil quality promoted bacterial diversity in vegetable cropland but decreased it in tea plantations, which implied soil quality was a structural factor in bacterial community composition but had contrasting effects for croplands versus plantations. Agricultural management played a negative role in maintaining microbial interactions, as identified by the network analysis, and furthermore the analysis revealed key functions of the microbial communities. After land-use change, the abundance (e.g., level, intensity) of microbial groups involved in N-cycling increased in tea plantations but decreased in vegetable cropland. The abundance of microbes involved in C-cycling featured an opposite trend. Higher level of N-fixation in tea plantations but the higher abundance of N-oxidation in vegetable cropland was demonstrated. Higher abundance of ammonia-oxidizing bacteria (8.5 × 104 vs. 0.9–2.4 × 104 copies) and ammonia-oxidizing archaea (3.0 × 105 vs. 0.5–1.0 × 105 copies) as identified by qPCR in cropland than that in plantations corroborated the FAPROTAX prediction. Therefore, the key taxa of soil microbial communities and microbial functions were largely dependent on changes in soil quality and determined responses to specific agricultural management.

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KW - C and N cycling

KW - Co-occurrence network

KW - Fertility

KW - Land-use change

KW - Microbial diversity

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