Development of novel PEX5-PEX14 protein-protein interaction (PPI) inhibitors based on an oxopiperazine template

Research output: Contribution to journalArticleResearchpeer review

Authors

  • Monika Marciniak
  • Piotr Mróz
  • Valeria Napolitano
  • Vishal C. Kalel
  • Roberto Fino
  • Emilia Pykacz
  • Wolfgang Schliebs
  • Oliver Plettenburg
  • Ralf Erdmann
  • Michael Sattler
  • Grzegorz M. Popowicz
  • Maciej Dawidowski

External Research Organisations

  • Medical University of Warsaw
  • Helmholtz Zentrum München - German Research Center for Environmental Health
  • Ruhr-Universität Bochum
  • Technical University of Munich (TUM)
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Details

Original languageEnglish
Article number115587
JournalEuropean Journal of Medicinal Chemistry
Volume258
Early online date25 Jun 2023
Publication statusPublished - 5 Oct 2023

Abstract

Protein-protein interactions (PPIs) constitute an important but challenging class of molecular targets for small molecules. The PEX5-PEX14 PPI has been shown to play a critical role in glycosome biogenesis and its disruption impairs the metabolism in Trpanosoma parasites, eventually leading to their death. Therefore, this PPI is a potential molecular target for new drugs against diseases caused by Trypanosoma infections. Here, we report a new class of peptidomimetic scaffolds to target the PEX5-PEX14 PPI. The molecular design was based on an oxopiperazine template for the α-helical mimetics. A structural simplification along with modifications of the central oxopiperazine scaffold and addressing the lipophilic interactions led to the development of peptidomimetics that inhibit PEX5-TbPEX14 PPI and display cellular activity against T. b. brucei. This approach provides an alternative approach towards the development of trypanocidal agents and may be generally useful for the design of helical mimetics as PPI inhibitors.

Keywords

    Oxopiperazine, Peptidomimetics, Protein-protein interaction inhibitors, Structure-based drug design, Trypanocidal inhibitors, α-Helical mimetics

ASJC Scopus subject areas

Cite this

Development of novel PEX5-PEX14 protein-protein interaction (PPI) inhibitors based on an oxopiperazine template. / Marciniak, Monika; Mróz, Piotr; Napolitano, Valeria et al.
In: European Journal of Medicinal Chemistry, Vol. 258, 115587, 05.10.2023.

Research output: Contribution to journalArticleResearchpeer review

Marciniak, M, Mróz, P, Napolitano, V, Kalel, VC, Fino, R, Pykacz, E, Schliebs, W, Plettenburg, O, Erdmann, R, Sattler, M, Popowicz, GM & Dawidowski, M 2023, 'Development of novel PEX5-PEX14 protein-protein interaction (PPI) inhibitors based on an oxopiperazine template', European Journal of Medicinal Chemistry, vol. 258, 115587. https://doi.org/10.1016/j.ejmech.2023.115587
Marciniak, M., Mróz, P., Napolitano, V., Kalel, V. C., Fino, R., Pykacz, E., Schliebs, W., Plettenburg, O., Erdmann, R., Sattler, M., Popowicz, G. M., & Dawidowski, M. (2023). Development of novel PEX5-PEX14 protein-protein interaction (PPI) inhibitors based on an oxopiperazine template. European Journal of Medicinal Chemistry, 258, Article 115587. https://doi.org/10.1016/j.ejmech.2023.115587
Marciniak M, Mróz P, Napolitano V, Kalel VC, Fino R, Pykacz E et al. Development of novel PEX5-PEX14 protein-protein interaction (PPI) inhibitors based on an oxopiperazine template. European Journal of Medicinal Chemistry. 2023 Oct 5;258:115587. Epub 2023 Jun 25. doi: 10.1016/j.ejmech.2023.115587
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title = "Development of novel PEX5-PEX14 protein-protein interaction (PPI) inhibitors based on an oxopiperazine template",
abstract = "Protein-protein interactions (PPIs) constitute an important but challenging class of molecular targets for small molecules. The PEX5-PEX14 PPI has been shown to play a critical role in glycosome biogenesis and its disruption impairs the metabolism in Trpanosoma parasites, eventually leading to their death. Therefore, this PPI is a potential molecular target for new drugs against diseases caused by Trypanosoma infections. Here, we report a new class of peptidomimetic scaffolds to target the PEX5-PEX14 PPI. The molecular design was based on an oxopiperazine template for the α-helical mimetics. A structural simplification along with modifications of the central oxopiperazine scaffold and addressing the lipophilic interactions led to the development of peptidomimetics that inhibit PEX5-TbPEX14 PPI and display cellular activity against T. b. brucei. This approach provides an alternative approach towards the development of trypanocidal agents and may be generally useful for the design of helical mimetics as PPI inhibitors.",
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note = "Funding Information: This study has been funded by Narodowe Centrum Nauki (grant UMO-2016/23/B/NZ7/03339 to M.D., M.M. and P.M.), Deutsche Forschungsgemeinschaft (grant FOR1905 to M.S. and R.E.) and by Bundesministerium f{\"u}r Bildung and Forschung (grant PEXMED to G.P., M.S. and R.E). ",
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AU - Marciniak, Monika

AU - Mróz, Piotr

AU - Napolitano, Valeria

AU - Kalel, Vishal C.

AU - Fino, Roberto

AU - Pykacz, Emilia

AU - Schliebs, Wolfgang

AU - Plettenburg, Oliver

AU - Erdmann, Ralf

AU - Sattler, Michael

AU - Popowicz, Grzegorz M.

AU - Dawidowski, Maciej

N1 - Funding Information: This study has been funded by Narodowe Centrum Nauki (grant UMO-2016/23/B/NZ7/03339 to M.D., M.M. and P.M.), Deutsche Forschungsgemeinschaft (grant FOR1905 to M.S. and R.E.) and by Bundesministerium für Bildung and Forschung (grant PEXMED to G.P., M.S. and R.E).

PY - 2023/10/5

Y1 - 2023/10/5

N2 - Protein-protein interactions (PPIs) constitute an important but challenging class of molecular targets for small molecules. The PEX5-PEX14 PPI has been shown to play a critical role in glycosome biogenesis and its disruption impairs the metabolism in Trpanosoma parasites, eventually leading to their death. Therefore, this PPI is a potential molecular target for new drugs against diseases caused by Trypanosoma infections. Here, we report a new class of peptidomimetic scaffolds to target the PEX5-PEX14 PPI. The molecular design was based on an oxopiperazine template for the α-helical mimetics. A structural simplification along with modifications of the central oxopiperazine scaffold and addressing the lipophilic interactions led to the development of peptidomimetics that inhibit PEX5-TbPEX14 PPI and display cellular activity against T. b. brucei. This approach provides an alternative approach towards the development of trypanocidal agents and may be generally useful for the design of helical mimetics as PPI inhibitors.

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