BioNex: A System For Biomedical News Event Exploration

Research output: Chapter in book/report/conference proceedingConference contributionResearchpeer review

Authors

  • Patrick Ernst
  • Arunav Mishra
  • Avishek Anand
  • Vinay Setty

Research Organisations

External Research Organisations

  • Max-Planck Institute for Informatics
  • Aalborg University
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Details

Original languageEnglish
Title of host publicationSIGIR 2017 - Proceedings of the 40th International ACM SIGIR Conference on Research and Development in Information Retrieval
PublisherAssociation for Computing Machinery (ACM)
Pages1277-1280
Number of pages4
ISBN (electronic)9781450350228
Publication statusPublished - 2017
Event40th International ACM SIGIR Conference on Research and Development in Information Retrieval, SIGIR 2017 - Tokyo, Shinjuku, Japan
Duration: 7 Aug 201711 Aug 2017

Abstract

We demonstrate BioNex, a system to mine, rank and visualize biomedical news events. BioNex takes biomedical queries such as "Ebola virus disease" and retrieves the k most relevant news events for them. To achieve this we first mine the generic news events by clustering them on a daily basis using general named entities and textual features. These clusters are also tagged with disambiguated biomedical entities which aid in biomedical news event exploration. These clusters are then used to compute the importance scores for the event clusters based on a combination of textual, semantic, popularity and historical importance features. BioNex also visualizes the retrieved event clusters to highlight the top news events and corresponding news articles for the given query. The visualization also provides the context for news events using (1) a chain of historically relevant news event clusters, and (2) other non-biomedical events from the same day.

Keywords

    Biological Event Exploration, Biomedical Entities, Event Clustering

ASJC Scopus subject areas

Sustainable Development Goals

Cite this

BioNex: A System For Biomedical News Event Exploration. / Ernst, Patrick; Mishra, Arunav; Anand, Avishek et al.
SIGIR 2017 - Proceedings of the 40th International ACM SIGIR Conference on Research and Development in Information Retrieval. Association for Computing Machinery (ACM), 2017. p. 1277-1280.

Research output: Chapter in book/report/conference proceedingConference contributionResearchpeer review

Ernst, P, Mishra, A, Anand, A & Setty, V 2017, BioNex: A System For Biomedical News Event Exploration. in SIGIR 2017 - Proceedings of the 40th International ACM SIGIR Conference on Research and Development in Information Retrieval. Association for Computing Machinery (ACM), pp. 1277-1280, 40th International ACM SIGIR Conference on Research and Development in Information Retrieval, SIGIR 2017, Tokyo, Shinjuku, Japan, 7 Aug 2017. https://doi.org/10.1145/3077136.3084150
Ernst, P., Mishra, A., Anand, A., & Setty, V. (2017). BioNex: A System For Biomedical News Event Exploration. In SIGIR 2017 - Proceedings of the 40th International ACM SIGIR Conference on Research and Development in Information Retrieval (pp. 1277-1280). Association for Computing Machinery (ACM). https://doi.org/10.1145/3077136.3084150
Ernst P, Mishra A, Anand A, Setty V. BioNex: A System For Biomedical News Event Exploration. In SIGIR 2017 - Proceedings of the 40th International ACM SIGIR Conference on Research and Development in Information Retrieval. Association for Computing Machinery (ACM). 2017. p. 1277-1280 doi: 10.1145/3077136.3084150
Ernst, Patrick ; Mishra, Arunav ; Anand, Avishek et al. / BioNex: A System For Biomedical News Event Exploration. SIGIR 2017 - Proceedings of the 40th International ACM SIGIR Conference on Research and Development in Information Retrieval. Association for Computing Machinery (ACM), 2017. pp. 1277-1280
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title = "BioNex: A System For Biomedical News Event Exploration",
abstract = "We demonstrate BioNex, a system to mine, rank and visualize biomedical news events. BioNex takes biomedical queries such as {"}Ebola virus disease{"} and retrieves the k most relevant news events for them. To achieve this we first mine the generic news events by clustering them on a daily basis using general named entities and textual features. These clusters are also tagged with disambiguated biomedical entities which aid in biomedical news event exploration. These clusters are then used to compute the importance scores for the event clusters based on a combination of textual, semantic, popularity and historical importance features. BioNex also visualizes the retrieved event clusters to highlight the top news events and corresponding news articles for the given query. The visualization also provides the context for news events using (1) a chain of historically relevant news event clusters, and (2) other non-biomedical events from the same day.",
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author = "Patrick Ernst and Arunav Mishra and Avishek Anand and Vinay Setty",
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Download

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AU - Ernst, Patrick

AU - Mishra, Arunav

AU - Anand, Avishek

AU - Setty, Vinay

N1 - Funding information: Œis research was partially funded by the Danish Council for Independent Research under grant agreement DFF-4093-00301.

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AB - We demonstrate BioNex, a system to mine, rank and visualize biomedical news events. BioNex takes biomedical queries such as "Ebola virus disease" and retrieves the k most relevant news events for them. To achieve this we first mine the generic news events by clustering them on a daily basis using general named entities and textual features. These clusters are also tagged with disambiguated biomedical entities which aid in biomedical news event exploration. These clusters are then used to compute the importance scores for the event clusters based on a combination of textual, semantic, popularity and historical importance features. BioNex also visualizes the retrieved event clusters to highlight the top news events and corresponding news articles for the given query. The visualization also provides the context for news events using (1) a chain of historically relevant news event clusters, and (2) other non-biomedical events from the same day.

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