A semantically adaptable integrated visualization and natural exploration of multi-scale biomedical data

Research output: Chapter in book/report/conference proceedingConference contributionResearchpeer review

Authors

  • Ricardo Manuel Millán Vaquero
  • Asan Agibetov
  • Jan Rzepecki
  • Marta Ondresik
  • Alexander Vais
  • Joaquim Miguel Oliveira
  • Giuseppe Patane
  • Karl Ingo Friese
  • Rui Luis Reis
  • Michela Spagnuolo
  • Franz Erich Wolter

External Research Organisations

  • IRCCS Policlinico San Martino Hospital
  • University of Minho
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Details

Original languageEnglish
Title of host publicationProceedings - Information Visualisation
Subtitle of host publicationComputer Graphics, Imaging and Visualisation, IV 2015
EditorsFatma Bouali, John Counsell, Sebastian Kernbach, Mark W. McK. Bannatyne, John Counsell, Chi Man Pun, Marjan Trutschl, Ebad Banissi, Weidong Huang, Gilles Venturini, Chun-Cheng Lin, Anna Ursyn, Remo Burkhard, Urska Cvek, Feng Lin, Theodor G. Wyeld, Jian J. Zhang, Martin J. Eppler, Georges Grinstein, Muhammad Sarfraz, Francis T. Marchese
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages543-552
Number of pages10
ISBN (electronic)9781467375689
Publication statusPublished - 2015
Event19th International Conference on Information Visualisation, IV 2015 - Barcelona, Spain
Duration: 22 Jul 201524 Jul 2015

Publication series

NameProceedings of the International Conference on Information Visualisation
Volume2015-September
ISSN (Print)1093-9547

Abstract

The exploration of biomedical data which involves heterogeneous sources coming from different spatial scales and medical domains is a challenging topic in current research. In this work, we combine efforts regarding multi-scale visualization, multimodal interaction and knowledge formalization for the exploration of multi-scale biomedical data. The knowledge formalization stores and organizes the information sources, the integrated visualization captures all relevant information for the domain expertise of the user and the multimodal interaction provides a natural exploration. We present a concrete example of use of the proposed exploratory system designed for a biologist investigating multi-scale pathologies.

Keywords

    Knowledge formalization, Multi-scale biomedical exploration, Natural exploration, Ontology

ASJC Scopus subject areas

Cite this

A semantically adaptable integrated visualization and natural exploration of multi-scale biomedical data. / Millán Vaquero, Ricardo Manuel; Agibetov, Asan; Rzepecki, Jan et al.
Proceedings - Information Visualisation: Computer Graphics, Imaging and Visualisation, IV 2015. ed. / Fatma Bouali; John Counsell; Sebastian Kernbach; Mark W. McK. Bannatyne; John Counsell; Chi Man Pun; Marjan Trutschl; Ebad Banissi; Weidong Huang; Gilles Venturini; Chun-Cheng Lin; Anna Ursyn; Remo Burkhard; Urska Cvek; Feng Lin; Theodor G. Wyeld; Jian J. Zhang; Martin J. Eppler; Georges Grinstein; Muhammad Sarfraz; Francis T. Marchese. Institute of Electrical and Electronics Engineers Inc., 2015. p. 543-552 7272655 (Proceedings of the International Conference on Information Visualisation; Vol. 2015-September).

Research output: Chapter in book/report/conference proceedingConference contributionResearchpeer review

Millán Vaquero, RM, Agibetov, A, Rzepecki, J, Ondresik, M, Vais, A, Oliveira, JM, Patane, G, Friese, KI, Reis, RL, Spagnuolo, M & Wolter, FE 2015, A semantically adaptable integrated visualization and natural exploration of multi-scale biomedical data. in F Bouali, J Counsell, S Kernbach, MWM Bannatyne, J Counsell, CM Pun, M Trutschl, E Banissi, W Huang, G Venturini, C-C Lin, A Ursyn, R Burkhard, U Cvek, F Lin, TG Wyeld, JJ Zhang, MJ Eppler, G Grinstein, M Sarfraz & FT Marchese (eds), Proceedings - Information Visualisation: Computer Graphics, Imaging and Visualisation, IV 2015., 7272655, Proceedings of the International Conference on Information Visualisation, vol. 2015-September, Institute of Electrical and Electronics Engineers Inc., pp. 543-552, 19th International Conference on Information Visualisation, IV 2015, Barcelona, Spain, 22 Jul 2015. https://doi.org/10.1109/iV.2015.96
Millán Vaquero, R. M., Agibetov, A., Rzepecki, J., Ondresik, M., Vais, A., Oliveira, J. M., Patane, G., Friese, K. I., Reis, R. L., Spagnuolo, M., & Wolter, F. E. (2015). A semantically adaptable integrated visualization and natural exploration of multi-scale biomedical data. In F. Bouali, J. Counsell, S. Kernbach, M. W. M. Bannatyne, J. Counsell, C. M. Pun, M. Trutschl, E. Banissi, W. Huang, G. Venturini, C.-C. Lin, A. Ursyn, R. Burkhard, U. Cvek, F. Lin, T. G. Wyeld, J. J. Zhang, M. J. Eppler, G. Grinstein, M. Sarfraz, ... F. T. Marchese (Eds.), Proceedings - Information Visualisation: Computer Graphics, Imaging and Visualisation, IV 2015 (pp. 543-552). Article 7272655 (Proceedings of the International Conference on Information Visualisation; Vol. 2015-September). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/iV.2015.96
Millán Vaquero RM, Agibetov A, Rzepecki J, Ondresik M, Vais A, Oliveira JM et al. A semantically adaptable integrated visualization and natural exploration of multi-scale biomedical data. In Bouali F, Counsell J, Kernbach S, Bannatyne MWM, Counsell J, Pun CM, Trutschl M, Banissi E, Huang W, Venturini G, Lin CC, Ursyn A, Burkhard R, Cvek U, Lin F, Wyeld TG, Zhang JJ, Eppler MJ, Grinstein G, Sarfraz M, Marchese FT, editors, Proceedings - Information Visualisation: Computer Graphics, Imaging and Visualisation, IV 2015. Institute of Electrical and Electronics Engineers Inc. 2015. p. 543-552. 7272655. (Proceedings of the International Conference on Information Visualisation). doi: 10.1109/iV.2015.96
Millán Vaquero, Ricardo Manuel ; Agibetov, Asan ; Rzepecki, Jan et al. / A semantically adaptable integrated visualization and natural exploration of multi-scale biomedical data. Proceedings - Information Visualisation: Computer Graphics, Imaging and Visualisation, IV 2015. editor / Fatma Bouali ; John Counsell ; Sebastian Kernbach ; Mark W. McK. Bannatyne ; John Counsell ; Chi Man Pun ; Marjan Trutschl ; Ebad Banissi ; Weidong Huang ; Gilles Venturini ; Chun-Cheng Lin ; Anna Ursyn ; Remo Burkhard ; Urska Cvek ; Feng Lin ; Theodor G. Wyeld ; Jian J. Zhang ; Martin J. Eppler ; Georges Grinstein ; Muhammad Sarfraz ; Francis T. Marchese. Institute of Electrical and Electronics Engineers Inc., 2015. pp. 543-552 (Proceedings of the International Conference on Information Visualisation).
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abstract = "The exploration of biomedical data which involves heterogeneous sources coming from different spatial scales and medical domains is a challenging topic in current research. In this work, we combine efforts regarding multi-scale visualization, multimodal interaction and knowledge formalization for the exploration of multi-scale biomedical data. The knowledge formalization stores and organizes the information sources, the integrated visualization captures all relevant information for the domain expertise of the user and the multimodal interaction provides a natural exploration. We present a concrete example of use of the proposed exploratory system designed for a biologist investigating multi-scale pathologies.",
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T1 - A semantically adaptable integrated visualization and natural exploration of multi-scale biomedical data

AU - Millán Vaquero, Ricardo Manuel

AU - Agibetov, Asan

AU - Rzepecki, Jan

AU - Ondresik, Marta

AU - Vais, Alexander

AU - Oliveira, Joaquim Miguel

AU - Patane, Giuseppe

AU - Friese, Karl Ingo

AU - Reis, Rui Luis

AU - Spagnuolo, Michela

AU - Wolter, Franz Erich

N1 - Publisher Copyright: © 2015 IEEE.

PY - 2015

Y1 - 2015

N2 - The exploration of biomedical data which involves heterogeneous sources coming from different spatial scales and medical domains is a challenging topic in current research. In this work, we combine efforts regarding multi-scale visualization, multimodal interaction and knowledge formalization for the exploration of multi-scale biomedical data. The knowledge formalization stores and organizes the information sources, the integrated visualization captures all relevant information for the domain expertise of the user and the multimodal interaction provides a natural exploration. We present a concrete example of use of the proposed exploratory system designed for a biologist investigating multi-scale pathologies.

AB - The exploration of biomedical data which involves heterogeneous sources coming from different spatial scales and medical domains is a challenging topic in current research. In this work, we combine efforts regarding multi-scale visualization, multimodal interaction and knowledge formalization for the exploration of multi-scale biomedical data. The knowledge formalization stores and organizes the information sources, the integrated visualization captures all relevant information for the domain expertise of the user and the multimodal interaction provides a natural exploration. We present a concrete example of use of the proposed exploratory system designed for a biologist investigating multi-scale pathologies.

KW - Knowledge formalization

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KW - Natural exploration

KW - Ontology

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