X-ray screening identifies active site and allosteric inhibitors of SARS-CoV-2 main protease

Publikation: Beitrag in FachzeitschriftArtikelForschungPeer-Review

Autoren

  • Sebastian Günther
  • Patrick Y. A. Reinke
  • Yaiza Fernandez-Garcia
  • Julia Lieske
  • Thomas J. Lane
  • Helen M. Ginn
  • Faisal H. M. Koua
  • Christiane Ehrt
  • Wiebke Ewert
  • Dominik Oberthuer
  • Oleksandr Yefanov
  • Susanne Meier
  • Kristina Lorenzen
  • Boris Krichel
  • Janine-Denise Kopicki
  • Luca Gelisio
  • Wolfgang Brehm
  • Ilona Dunkel
  • Brandon Seychell
  • Henry Gieseler
  • Brenna Norton-Baker
  • Beatriz Escudero-Perez
  • Martin Domaracky
  • Sofiane Saouane
  • Alexandra Tolstikova
  • Thomas A. White
  • Anna Hänle
  • Michael Groessler
  • Holger Fleckenstein
  • Fabian Trost
  • Marina Galchenkova
  • Yaroslav Gevorkov
  • Chufeng Li
  • Salah Awel
  • Ariana Peck
  • Miriam Barthelmess
  • Frank Schlünzen
  • P. Lourdu Xavier
  • Nadine Werner
  • Hina Andaleeb
  • Najeeb Ullah
  • Sven Falke
  • Vasundara Srinivasan
  • Bruno Alves Franca
  • Martin Schwinzer
  • Hevila Brognaro
  • Cromarte Rogers
  • Diogo Melo
  • Joanna J. Zaitseva-Doyle
  • Juraj Knoska
  • Gisel E. Pena-Murillo
  • Aida Rahmani Mashhour
  • Vincent Hennicke
  • Pontus Fischer
  • Johanna Hakanpää
  • Philip Gribbon
  • Bernhard Ellinger
  • Maria Kuzikov
  • Markus Wolf
  • Andrea R. Beccari
  • Gleb Bourenkov
  • David von Stetten
  • Guillaume Pompidor
  • Isabel Bento
  • Saravanan Panneerselvam
  • Ivars Karpics
  • Thomas R. Schneider
  • Maria Marta Garcia-Alai
  • Stephan Niebling
  • Christian Günther
  • Christina Schmidt
  • Robin Schubert
  • Huijong Han
  • Juliane Boger
  • Diana C. F. Monteiro
  • Linlin Zhang
  • Xinyuanyuan Sun
  • Jonathan Pletzer-Zelgert
  • Jan Wollenhaupt
  • Christian G. Feiler
  • Manfred S. Weiss
  • Eike-Christian Schulz
  • Pedram Mehrabi
  • Katarina Karnicar
  • Aleksandra Usenik
  • Jure Loboda
  • Henning Tidow
  • Ashwin Chari
  • Rolf Hilgenfeld
  • Charlotte Uetrecht
  • Russell Cox
  • Andrea Zaliani
  • Tobias Beck
  • Matthias Rarey
  • Stephan Günther
  • Dusan Turk
  • Winfried Hinrichs
  • Henry N. Chapman
  • Arwen R. Pearson
  • Christian Betzel
  • Alke Meents
  • Jan Meyer

Organisationseinheiten

Externe Organisationen

  • Deutsches Elektronen-Synchrotron (DESY)
  • Bernhard-Nocht-Institut für Tropenmedizin (BNITM)
  • Diamond Light Source
  • Universität Hamburg
  • European X-Ray Free-Electron Laser Facility GmbH (XFEL)
  • Heinrich-Pette-Institut Leibniz-Institut für Experimentelle Virologie (HPI)
  • Max-Planck-Institut für molekulare Genetik (MPIMG)
  • Max-Planck-Institut für Struktur und Dynamik der Materie
  • University of California at Irvine
  • Technische Universität Hamburg (TUHH)
  • California Institute of Technology (Caltech)
  • Fraunhofer-Institut für Translationale Medizin und Pharmakologie ITMP
  • Dompé Farmaceutici SpA
  • Universität zu Lübeck
  • Hauptman-Woodward Medical Research Institute
  • Helmholtz-Zentrum Berlin für Materialien und Energie GmbH
  • Institut "Jožef Stefan" (IJS)
  • Max-Planck-Institut für Biophysik
  • Universität Greifswald
Forschungs-netzwerk anzeigen

Details

OriginalspracheEnglisch
Seiten (von - bis)642-646
Seitenumfang5
FachzeitschriftSCIENCE
Jahrgang372
Ausgabenummer6542
Frühes Online-Datum2 Apr. 2021
PublikationsstatusVeröffentlicht - 7 Mai 2021

Abstract

The coronavirus disease (COVID-19) caused by SARS-CoV-2 is creating tremendous human suffering. To date, no effective drug is available to directly treat the disease. In a search for a drug against COVID-19, we have performed a high-throughput X-ray crystallographic screen of two repurposing drug libraries against the SARS-CoV-2 main protease (Mpro), which is essential for viral replication. In contrast to commonly applied X-ray fragment screening experiments with molecules of low complexity, our screen tested alreadyapproved drugs and drugs in clinical trials. From the three-dimensional protein structures, we identified 37 compounds that bind to Mpro. In subsequent cell-based viral reduction assays, one peptidomimetic and six nonpeptidic compounds showed antiviral activity at nontoxic concentrations. We identified two allosteric binding sites representing attractive targets for drug development against SARS-CoV-2.

ASJC Scopus Sachgebiete

Ziele für nachhaltige Entwicklung

Zitieren

X-ray screening identifies active site and allosteric inhibitors of SARS-CoV-2 main protease. / Günther, Sebastian; Reinke, Patrick Y. A.; Fernandez-Garcia, Yaiza et al.
in: SCIENCE, Jahrgang 372, Nr. 6542, 07.05.2021, S. 642-646.

Publikation: Beitrag in FachzeitschriftArtikelForschungPeer-Review

Günther, S, Reinke, PYA, Fernandez-Garcia, Y, Lieske, J, Lane, TJ, Ginn, HM, Koua, FHM, Ehrt, C, Ewert, W, Oberthuer, D, Yefanov, O, Meier, S, Lorenzen, K, Krichel, B, Kopicki, J-D, Gelisio, L, Brehm, W, Dunkel, I, Seychell, B, Gieseler, H, Norton-Baker, B, Escudero-Perez, B, Domaracky, M, Saouane, S, Tolstikova, A, White, TA, Hänle, A, Groessler, M, Fleckenstein, H, Trost, F, Galchenkova, M, Gevorkov, Y, Li, C, Awel, S, Peck, A, Barthelmess, M, Schlünzen, F, Xavier, PL, Werner, N, Andaleeb, H, Ullah, N, Falke, S, Srinivasan, V, Franca, BA, Schwinzer, M, Brognaro, H, Rogers, C, Melo, D, Zaitseva-Doyle, JJ, Knoska, J, Pena-Murillo, GE, Mashhour, AR, Hennicke, V, Fischer, P, Hakanpää, J, Gribbon, P, Ellinger, B, Kuzikov, M, Wolf, M, Beccari, AR, Bourenkov, G, von Stetten, D, Pompidor, G, Bento, I, Panneerselvam, S, Karpics, I, Schneider, TR, Garcia-Alai, MM, Niebling, S, Günther, C, Schmidt, C, Schubert, R, Han, H, Boger, J, Monteiro, DCF, Zhang, L, Sun, X, Pletzer-Zelgert, J, Wollenhaupt, J, Feiler, CG, Weiss, MS, Schulz, E-C, Mehrabi, P, Karnicar, K, Usenik, A, Loboda, J, Tidow, H, Chari, A, Hilgenfeld, R, Uetrecht, C, Cox, R, Zaliani, A, Beck, T, Rarey, M, Günther, S, Turk, D, Hinrichs, W, Chapman, HN, Pearson, AR, Betzel, C, Meents, A & Meyer, J 2021, 'X-ray screening identifies active site and allosteric inhibitors of SARS-CoV-2 main protease', SCIENCE, Jg. 372, Nr. 6542, S. 642-646. https://doi.org/10.1126/science.abf7945
Günther, S., Reinke, P. Y. A., Fernandez-Garcia, Y., Lieske, J., Lane, T. J., Ginn, H. M., Koua, F. H. M., Ehrt, C., Ewert, W., Oberthuer, D., Yefanov, O., Meier, S., Lorenzen, K., Krichel, B., Kopicki, J.-D., Gelisio, L., Brehm, W., Dunkel, I., Seychell, B., ... Meyer, J. (2021). X-ray screening identifies active site and allosteric inhibitors of SARS-CoV-2 main protease. SCIENCE, 372(6542), 642-646. https://doi.org/10.1126/science.abf7945
Günther S, Reinke PYA, Fernandez-Garcia Y, Lieske J, Lane TJ, Ginn HM et al. X-ray screening identifies active site and allosteric inhibitors of SARS-CoV-2 main protease. SCIENCE. 2021 Mai 7;372(6542):642-646. Epub 2021 Apr 2. doi: 10.1126/science.abf7945
Günther, Sebastian ; Reinke, Patrick Y. A. ; Fernandez-Garcia, Yaiza et al. / X-ray screening identifies active site and allosteric inhibitors of SARS-CoV-2 main protease. in: SCIENCE. 2021 ; Jahrgang 372, Nr. 6542. S. 642-646.
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title = "X-ray screening identifies active site and allosteric inhibitors of SARS-CoV-2 main protease",
abstract = "The coronavirus disease (COVID-19) caused by SARS-CoV-2 is creating tremendous human suffering. To date, no effective drug is available to directly treat the disease. In a search for a drug against COVID-19, we have performed a high-throughput X-ray crystallographic screen of two repurposing drug libraries against the SARS-CoV-2 main protease (Mpro), which is essential for viral replication. In contrast to commonly applied X-ray fragment screening experiments with molecules of low complexity, our screen tested alreadyapproved drugs and drugs in clinical trials. From the three-dimensional protein structures, we identified 37 compounds that bind to Mpro. In subsequent cell-based viral reduction assays, one peptidomimetic and six nonpeptidic compounds showed antiviral activity at nontoxic concentrations. We identified two allosteric binding sites representing attractive targets for drug development against SARS-CoV-2.",
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month = may,
day = "7",
doi = "10.1126/science.abf7945",
language = "English",
volume = "372",
pages = "642--646",
journal = "SCIENCE",
issn = "0036-8075",
publisher = "American Association for the Advancement of Science",
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TY - JOUR

T1 - X-ray screening identifies active site and allosteric inhibitors of SARS-CoV-2 main protease

AU - Günther, Sebastian

AU - Reinke, Patrick Y. A.

AU - Fernandez-Garcia, Yaiza

AU - Lieske, Julia

AU - Lane, Thomas J.

AU - Ginn, Helen M.

AU - Koua, Faisal H. M.

AU - Ehrt, Christiane

AU - Ewert, Wiebke

AU - Oberthuer, Dominik

AU - Yefanov, Oleksandr

AU - Meier, Susanne

AU - Lorenzen, Kristina

AU - Krichel, Boris

AU - Kopicki, Janine-Denise

AU - Gelisio, Luca

AU - Brehm, Wolfgang

AU - Dunkel, Ilona

AU - Seychell, Brandon

AU - Gieseler, Henry

AU - Norton-Baker, Brenna

AU - Escudero-Perez, Beatriz

AU - Domaracky, Martin

AU - Saouane, Sofiane

AU - Tolstikova, Alexandra

AU - White, Thomas A.

AU - Hänle, Anna

AU - Groessler, Michael

AU - Fleckenstein, Holger

AU - Trost, Fabian

AU - Galchenkova, Marina

AU - Gevorkov, Yaroslav

AU - Li, Chufeng

AU - Awel, Salah

AU - Peck, Ariana

AU - Barthelmess, Miriam

AU - Schlünzen, Frank

AU - Xavier, P. Lourdu

AU - Werner, Nadine

AU - Andaleeb, Hina

AU - Ullah, Najeeb

AU - Falke, Sven

AU - Srinivasan, Vasundara

AU - Franca, Bruno Alves

AU - Schwinzer, Martin

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AU - Rogers, Cromarte

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AU - Mashhour, Aida Rahmani

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AU - Fischer, Pontus

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AU - Gribbon, Philip

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AU - Kuzikov, Maria

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AU - von Stetten, David

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AU - Bento, Isabel

AU - Panneerselvam, Saravanan

AU - Karpics, Ivars

AU - Schneider, Thomas R.

AU - Garcia-Alai, Maria Marta

AU - Niebling, Stephan

AU - Günther, Christian

AU - Schmidt, Christina

AU - Schubert, Robin

AU - Han, Huijong

AU - Boger, Juliane

AU - Monteiro, Diana C. F.

AU - Zhang, Linlin

AU - Sun, Xinyuanyuan

AU - Pletzer-Zelgert, Jonathan

AU - Wollenhaupt, Jan

AU - Feiler, Christian G.

AU - Weiss, Manfred S.

AU - Schulz, Eike-Christian

AU - Mehrabi, Pedram

AU - Karnicar, Katarina

AU - Usenik, Aleksandra

AU - Loboda, Jure

AU - Tidow, Henning

AU - Chari, Ashwin

AU - Hilgenfeld, Rolf

AU - Uetrecht, Charlotte

AU - Cox, Russell

AU - Zaliani, Andrea

AU - Beck, Tobias

AU - Rarey, Matthias

AU - Günther, Stephan

AU - Turk, Dusan

AU - Hinrichs, Winfried

AU - Chapman, Henry N.

AU - Pearson, Arwen R.

AU - Betzel, Christian

AU - Meents, Alke

AU - Meyer, Jan

PY - 2021/5/7

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N2 - The coronavirus disease (COVID-19) caused by SARS-CoV-2 is creating tremendous human suffering. To date, no effective drug is available to directly treat the disease. In a search for a drug against COVID-19, we have performed a high-throughput X-ray crystallographic screen of two repurposing drug libraries against the SARS-CoV-2 main protease (Mpro), which is essential for viral replication. In contrast to commonly applied X-ray fragment screening experiments with molecules of low complexity, our screen tested alreadyapproved drugs and drugs in clinical trials. From the three-dimensional protein structures, we identified 37 compounds that bind to Mpro. In subsequent cell-based viral reduction assays, one peptidomimetic and six nonpeptidic compounds showed antiviral activity at nontoxic concentrations. We identified two allosteric binding sites representing attractive targets for drug development against SARS-CoV-2.

AB - The coronavirus disease (COVID-19) caused by SARS-CoV-2 is creating tremendous human suffering. To date, no effective drug is available to directly treat the disease. In a search for a drug against COVID-19, we have performed a high-throughput X-ray crystallographic screen of two repurposing drug libraries against the SARS-CoV-2 main protease (Mpro), which is essential for viral replication. In contrast to commonly applied X-ray fragment screening experiments with molecules of low complexity, our screen tested alreadyapproved drugs and drugs in clinical trials. From the three-dimensional protein structures, we identified 37 compounds that bind to Mpro. In subsequent cell-based viral reduction assays, one peptidomimetic and six nonpeptidic compounds showed antiviral activity at nontoxic concentrations. We identified two allosteric binding sites representing attractive targets for drug development against SARS-CoV-2.

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DO - 10.1126/science.abf7945

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