Towards a standardized protocol for studying chemolithoautotrophic denitrification with pyrite at circumneutral pH

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  • China University of Mining And Technology
  • Eberhard Karls Universität Tübingen
  • Universität Bayreuth
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OriginalspracheEnglisch
Aufsatznummer104995
FachzeitschriftApplied geochemistry
Jahrgang130
Frühes Online-Datum14 Mai 2021
PublikationsstatusVeröffentlicht - Juli 2021

Abstract

Laboratory studies on chemolithoautotrophic microbial denitrification coupled to pyrite oxidation at circumneutral pH yielded conflicting results. Some studies indicated that microbial oxidation of pyrite does occur, but several reports have shown that no microbial pyrite oxidation took place in experiments with pyrite as electron donor and nitrate as electron acceptor. We propose that inconsistent experimental and analytical protocols may cause substantial uncertainty in the interpretation of results from such laboratory studies, and may even produce artifacts. In this study, a comprehensive overview of possible pitfalls and artifacts in relation to geochemical and microbiological interferences is provided. Key interferences are impurities of reduced sulfur species associated with pyrite, interferences of nitrite and dissolved Fe(III) with quantitative spectrophotometric determination of Fe(II) and Fe(III) during acidic extractions, interference of oxygen, occurrence of residual iron and sulfur compounds in the reaction medium, and interference of cell-associated and stored sulfur. Therefore, we propose a series of experimental standard protocols to overcome these interferences in future studies on chemolithoautotrophic denitrification with pyrite.

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Towards a standardized protocol for studying chemolithoautotrophic denitrification with pyrite at circumneutral pH. / Yan, Ruiwen; Kappler, Andreas; Horn, Marcus A. et al.
in: Applied geochemistry, Jahrgang 130, 104995, 07.2021.

Publikation: Beitrag in FachzeitschriftArtikelForschungPeer-Review

Yan R, Kappler A, Horn MA, Peiffer S. Towards a standardized protocol for studying chemolithoautotrophic denitrification with pyrite at circumneutral pH. Applied geochemistry. 2021 Jul;130:104995. Epub 2021 Mai 14. doi: 10.1016/j.apgeochem.2021.104995
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abstract = "Laboratory studies on chemolithoautotrophic microbial denitrification coupled to pyrite oxidation at circumneutral pH yielded conflicting results. Some studies indicated that microbial oxidation of pyrite does occur, but several reports have shown that no microbial pyrite oxidation took place in experiments with pyrite as electron donor and nitrate as electron acceptor. We propose that inconsistent experimental and analytical protocols may cause substantial uncertainty in the interpretation of results from such laboratory studies, and may even produce artifacts. In this study, a comprehensive overview of possible pitfalls and artifacts in relation to geochemical and microbiological interferences is provided. Key interferences are impurities of reduced sulfur species associated with pyrite, interferences of nitrite and dissolved Fe(III) with quantitative spectrophotometric determination of Fe(II) and Fe(III) during acidic extractions, interference of oxygen, occurrence of residual iron and sulfur compounds in the reaction medium, and interference of cell-associated and stored sulfur. Therefore, we propose a series of experimental standard protocols to overcome these interferences in future studies on chemolithoautotrophic denitrification with pyrite.",
keywords = "Conflicting results, Geochemical interference, Iron oxidation, Iron sulfide minerals, Microbiological interference, Nitrate reduction",
author = "Ruiwen Yan and Andreas Kappler and Horn, {Marcus A.} and Stefan Peiffer",
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T1 - Towards a standardized protocol for studying chemolithoautotrophic denitrification with pyrite at circumneutral pH

AU - Yan, Ruiwen

AU - Kappler, Andreas

AU - Horn, Marcus A.

AU - Peiffer, Stefan

N1 - Funding Information: This work was supported by Fundamental Research Funds for the Central Universities (Grant No. 2019QD03 ).

PY - 2021/7

Y1 - 2021/7

N2 - Laboratory studies on chemolithoautotrophic microbial denitrification coupled to pyrite oxidation at circumneutral pH yielded conflicting results. Some studies indicated that microbial oxidation of pyrite does occur, but several reports have shown that no microbial pyrite oxidation took place in experiments with pyrite as electron donor and nitrate as electron acceptor. We propose that inconsistent experimental and analytical protocols may cause substantial uncertainty in the interpretation of results from such laboratory studies, and may even produce artifacts. In this study, a comprehensive overview of possible pitfalls and artifacts in relation to geochemical and microbiological interferences is provided. Key interferences are impurities of reduced sulfur species associated with pyrite, interferences of nitrite and dissolved Fe(III) with quantitative spectrophotometric determination of Fe(II) and Fe(III) during acidic extractions, interference of oxygen, occurrence of residual iron and sulfur compounds in the reaction medium, and interference of cell-associated and stored sulfur. Therefore, we propose a series of experimental standard protocols to overcome these interferences in future studies on chemolithoautotrophic denitrification with pyrite.

AB - Laboratory studies on chemolithoautotrophic microbial denitrification coupled to pyrite oxidation at circumneutral pH yielded conflicting results. Some studies indicated that microbial oxidation of pyrite does occur, but several reports have shown that no microbial pyrite oxidation took place in experiments with pyrite as electron donor and nitrate as electron acceptor. We propose that inconsistent experimental and analytical protocols may cause substantial uncertainty in the interpretation of results from such laboratory studies, and may even produce artifacts. In this study, a comprehensive overview of possible pitfalls and artifacts in relation to geochemical and microbiological interferences is provided. Key interferences are impurities of reduced sulfur species associated with pyrite, interferences of nitrite and dissolved Fe(III) with quantitative spectrophotometric determination of Fe(II) and Fe(III) during acidic extractions, interference of oxygen, occurrence of residual iron and sulfur compounds in the reaction medium, and interference of cell-associated and stored sulfur. Therefore, we propose a series of experimental standard protocols to overcome these interferences in future studies on chemolithoautotrophic denitrification with pyrite.

KW - Conflicting results

KW - Geochemical interference

KW - Iron oxidation

KW - Iron sulfide minerals

KW - Microbiological interference

KW - Nitrate reduction

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DO - 10.1016/j.apgeochem.2021.104995

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JO - Applied geochemistry

JF - Applied geochemistry

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