Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization

Publikation: Beitrag in FachzeitschriftArtikelForschungPeer-Review

Autoren

  • Bertrand Beckert
  • Maha Abdelshahid
  • Heinrich Schäfer
  • Wieland Steinchen
  • Stefan Arenz
  • Otto Berninghausen
  • Roland Beckmann
  • Gert Bange
  • Kürşad Turgay
  • Daniel N. Wilson

Externe Organisationen

  • Ludwig-Maximilians-Universität München (LMU)
  • Philipps-Universität Marburg
  • Universität Hamburg
Forschungs-netzwerk anzeigen

Details

OriginalspracheEnglisch
Seiten (von - bis)2061-2072
Seitenumfang12
FachzeitschriftEMBO Journal
Jahrgang36
Ausgabenummer14
PublikationsstatusVeröffentlicht - 14 Juli 2017

Abstract

Under stress conditions, such as nutrient deprivation, bacteria enter into a hibernation stage, which is characterized by the appearance of 100S ribosomal particles. In Escherichia coli, dimerization of 70S ribosomes into 100S requires the action of the ribosome modulation factor (RMF) and the hibernation-promoting factor (HPF). Most other bacteria lack RMF and instead contain a long form HPF (LHPF), which is necessary and sufficient for 100S formation. While some structural information exists as to how RMF and HPF mediate formation of E. coli 100S (Ec100S), structural insight into 100S formation by LHPF has so far been lacking. Here we present a cryo-EM structure of the Bacillus subtilis hibernating 100S (Bs100S), revealing that the C-terminal domain (CTD) of the LHPF occupies a site on the 30S platform distinct from RMF. Moreover, unlike RMF, the BsHPF-CTD is directly involved in forming the dimer interface, thereby illustrating the divergent mechanisms by which 100S formation is mediated in the majority of bacteria that contain LHPF, compared to some γ-proteobacteria, such as E. coli.

Zitieren

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization. / Beckert, Bertrand; Abdelshahid, Maha; Schäfer, Heinrich et al.
in: EMBO Journal, Jahrgang 36, Nr. 14, 14.07.2017, S. 2061-2072.

Publikation: Beitrag in FachzeitschriftArtikelForschungPeer-Review

Beckert, B, Abdelshahid, M, Schäfer, H, Steinchen, W, Arenz, S, Berninghausen, O, Beckmann, R, Bange, G, Turgay, K & Wilson, DN 2017, 'Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization', EMBO Journal, Jg. 36, Nr. 14, S. 2061-2072. https://doi.org/10.15252/embj.201696189
Beckert, B., Abdelshahid, M., Schäfer, H., Steinchen, W., Arenz, S., Berninghausen, O., Beckmann, R., Bange, G., Turgay, K., & Wilson, D. N. (2017). Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization. EMBO Journal, 36(14), 2061-2072. https://doi.org/10.15252/embj.201696189
Beckert B, Abdelshahid M, Schäfer H, Steinchen W, Arenz S, Berninghausen O et al. Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization. EMBO Journal. 2017 Jul 14;36(14):2061-2072. doi: 10.15252/embj.201696189
Beckert, Bertrand ; Abdelshahid, Maha ; Schäfer, Heinrich et al. / Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization. in: EMBO Journal. 2017 ; Jahrgang 36, Nr. 14. S. 2061-2072.
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title = "Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization",
abstract = "Under stress conditions, such as nutrient deprivation, bacteria enter into a hibernation stage, which is characterized by the appearance of 100S ribosomal particles. In Escherichia coli, dimerization of 70S ribosomes into 100S requires the action of the ribosome modulation factor (RMF) and the hibernation-promoting factor (HPF). Most other bacteria lack RMF and instead contain a long form HPF (LHPF), which is necessary and sufficient for 100S formation. While some structural information exists as to how RMF and HPF mediate formation of E. coli 100S (Ec100S), structural insight into 100S formation by LHPF has so far been lacking. Here we present a cryo-EM structure of the Bacillus subtilis hibernating 100S (Bs100S), revealing that the C-terminal domain (CTD) of the LHPF occupies a site on the 30S platform distinct from RMF. Moreover, unlike RMF, the BsHPF-CTD is directly involved in forming the dimer interface, thereby illustrating the divergent mechanisms by which 100S formation is mediated in the majority of bacteria that contain LHPF, compared to some γ-proteobacteria, such as E. coli.",
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T1 - Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization

AU - Beckert, Bertrand

AU - Abdelshahid, Maha

AU - Schäfer, Heinrich

AU - Steinchen, Wieland

AU - Arenz, Stefan

AU - Berninghausen, Otto

AU - Beckmann, Roland

AU - Bange, Gert

AU - Turgay, Kürşad

AU - Wilson, Daniel N.

N1 - Funding information: We thank Heidimarie Sieber, Charlotte Ungewickell, and Susanne Rieder for expert technical assistance; Uwe Linne (Marburg) for mass spectrometry support; and Beckmann-Coulter GmbH (Krefeld, Germany) for kindly providing the DelsaMax CORE. This research was supported by grants from the Deutsche Forschungsgemeinschaft (SPP-1879 to K.T., G.B., and D.N.W.).

PY - 2017/7/14

Y1 - 2017/7/14

N2 - Under stress conditions, such as nutrient deprivation, bacteria enter into a hibernation stage, which is characterized by the appearance of 100S ribosomal particles. In Escherichia coli, dimerization of 70S ribosomes into 100S requires the action of the ribosome modulation factor (RMF) and the hibernation-promoting factor (HPF). Most other bacteria lack RMF and instead contain a long form HPF (LHPF), which is necessary and sufficient for 100S formation. While some structural information exists as to how RMF and HPF mediate formation of E. coli 100S (Ec100S), structural insight into 100S formation by LHPF has so far been lacking. Here we present a cryo-EM structure of the Bacillus subtilis hibernating 100S (Bs100S), revealing that the C-terminal domain (CTD) of the LHPF occupies a site on the 30S platform distinct from RMF. Moreover, unlike RMF, the BsHPF-CTD is directly involved in forming the dimer interface, thereby illustrating the divergent mechanisms by which 100S formation is mediated in the majority of bacteria that contain LHPF, compared to some γ-proteobacteria, such as E. coli.

AB - Under stress conditions, such as nutrient deprivation, bacteria enter into a hibernation stage, which is characterized by the appearance of 100S ribosomal particles. In Escherichia coli, dimerization of 70S ribosomes into 100S requires the action of the ribosome modulation factor (RMF) and the hibernation-promoting factor (HPF). Most other bacteria lack RMF and instead contain a long form HPF (LHPF), which is necessary and sufficient for 100S formation. While some structural information exists as to how RMF and HPF mediate formation of E. coli 100S (Ec100S), structural insight into 100S formation by LHPF has so far been lacking. Here we present a cryo-EM structure of the Bacillus subtilis hibernating 100S (Bs100S), revealing that the C-terminal domain (CTD) of the LHPF occupies a site on the 30S platform distinct from RMF. Moreover, unlike RMF, the BsHPF-CTD is directly involved in forming the dimer interface, thereby illustrating the divergent mechanisms by which 100S formation is mediated in the majority of bacteria that contain LHPF, compared to some γ-proteobacteria, such as E. coli.

KW - cryo-EM

KW - hibernation

KW - HPF

KW - RMF

KW - translation

UR - http://www.scopus.com/inward/record.url?scp=85018979980&partnerID=8YFLogxK

U2 - 10.15252/embj.201696189

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M3 - Article

C2 - 28468753

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JO - EMBO Journal

JF - EMBO Journal

SN - 0261-4189

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