Ontology Design for Pharmaceutical Research Outcomes

Publikation: Beitrag in Buch/Bericht/Sammelwerk/KonferenzbandAufsatz in KonferenzbandForschungPeer-Review

Autorschaft

  • Zeynep Say
  • Said Fathalla
  • Sahar Vahdati
  • Jens Lehmann
  • Sören Auer

Externe Organisationen

  • Rheinische Friedrich-Wilhelms-Universität Bonn
  • Alexandria University
  • University of Oxford
  • Fraunhofer-Institut für Intelligente Analyse- und Informationssysteme (IAIS)
  • Technische Informationsbibliothek (TIB) Leibniz-Informationszentrum Technik und Naturwissenschaften und Universitätsbibliothek
Forschungs-netzwerk anzeigen

Details

OriginalspracheEnglisch
Titel des SammelwerksDigital Libraries for Open Knowledge
Untertitel24th International Conference on Theory and Practice of Digital Libraries, TPDL 2020, Proceedings
Herausgeber/-innenMark Hall, Tanja Mercun, Thomas Risse, Fabien Duchateau
Seiten119-132
Seitenumfang14
ISBN (elektronisch)978-3-030-54956-5
PublikationsstatusVeröffentlicht - 2020
Extern publiziertJa
Veranstaltung24th International Conference on Theory and Practice of Digital Libraries, TPDL 2020 - Lyon, Frankreich
Dauer: 25 Aug. 202028 Aug. 2020

Publikationsreihe

NameLecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Band12246 LNCS
ISSN (Print)0302-9743
ISSN (elektronisch)1611-3349

Abstract

The network of scholarly publishing involves generating and exchanging ideas, certifying research, publishing in order to disseminate findings, and preserving outputs. Despite enormous efforts in providing support for each of those steps in scholarly communication, identifying knowledge fragments is still a big challenge. This is due to the heterogeneous nature of the scholarly data and the current paradigm of distribution by publishing (mostly document-based) over journal articles, numerous repositories, and libraries. Therefore, transforming this paradigm to knowledge-based representation is expected to reform the knowledge sharing in the scholarly world. Although many movements have been initiated in recent years, non-technical scientific communities suffer from transforming document-based publishing to knowledge-based publishing. In this paper, we present a model (PharmSci) for scholarly publishing in the pharmaceutical research domain with the goal of facilitating knowledge discovery through effective ontology-based data integration. PharmSci provides machine-interpretable information to the knowledge discovery process. The principles and guidelines of the ontological engineering have been followed. Reasoning-based techniques are also presented in the design of the ontology to improve the quality of targeted tasks for data integration. The developed ontology is evaluated with a validation process and also a quality verification method.

ASJC Scopus Sachgebiete

Zitieren

Ontology Design for Pharmaceutical Research Outcomes. / Say, Zeynep; Fathalla, Said; Vahdati, Sahar et al.
Digital Libraries for Open Knowledge : 24th International Conference on Theory and Practice of Digital Libraries, TPDL 2020, Proceedings. Hrsg. / Mark Hall; Tanja Mercun; Thomas Risse; Fabien Duchateau. 2020. S. 119-132 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Band 12246 LNCS).

Publikation: Beitrag in Buch/Bericht/Sammelwerk/KonferenzbandAufsatz in KonferenzbandForschungPeer-Review

Say, Z, Fathalla, S, Vahdati, S, Lehmann, J & Auer, S 2020, Ontology Design for Pharmaceutical Research Outcomes. in M Hall, T Mercun, T Risse & F Duchateau (Hrsg.), Digital Libraries for Open Knowledge : 24th International Conference on Theory and Practice of Digital Libraries, TPDL 2020, Proceedings. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Bd. 12246 LNCS, S. 119-132, 24th International Conference on Theory and Practice of Digital Libraries, TPDL 2020, Lyon, Frankreich, 25 Aug. 2020. https://doi.org/10.1007/978-3-030-54956-5_9
Say, Z., Fathalla, S., Vahdati, S., Lehmann, J., & Auer, S. (2020). Ontology Design for Pharmaceutical Research Outcomes. In M. Hall, T. Mercun, T. Risse, & F. Duchateau (Hrsg.), Digital Libraries for Open Knowledge : 24th International Conference on Theory and Practice of Digital Libraries, TPDL 2020, Proceedings (S. 119-132). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Band 12246 LNCS). https://doi.org/10.1007/978-3-030-54956-5_9
Say Z, Fathalla S, Vahdati S, Lehmann J, Auer S. Ontology Design for Pharmaceutical Research Outcomes. in Hall M, Mercun T, Risse T, Duchateau F, Hrsg., Digital Libraries for Open Knowledge : 24th International Conference on Theory and Practice of Digital Libraries, TPDL 2020, Proceedings. 2020. S. 119-132. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). Epub 2020 Aug 17. doi: 10.1007/978-3-030-54956-5_9
Say, Zeynep ; Fathalla, Said ; Vahdati, Sahar et al. / Ontology Design for Pharmaceutical Research Outcomes. Digital Libraries for Open Knowledge : 24th International Conference on Theory and Practice of Digital Libraries, TPDL 2020, Proceedings. Hrsg. / Mark Hall ; Tanja Mercun ; Thomas Risse ; Fabien Duchateau. 2020. S. 119-132 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).
Download
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abstract = "The network of scholarly publishing involves generating and exchanging ideas, certifying research, publishing in order to disseminate findings, and preserving outputs. Despite enormous efforts in providing support for each of those steps in scholarly communication, identifying knowledge fragments is still a big challenge. This is due to the heterogeneous nature of the scholarly data and the current paradigm of distribution by publishing (mostly document-based) over journal articles, numerous repositories, and libraries. Therefore, transforming this paradigm to knowledge-based representation is expected to reform the knowledge sharing in the scholarly world. Although many movements have been initiated in recent years, non-technical scientific communities suffer from transforming document-based publishing to knowledge-based publishing. In this paper, we present a model (PharmSci) for scholarly publishing in the pharmaceutical research domain with the goal of facilitating knowledge discovery through effective ontology-based data integration. PharmSci provides machine-interpretable information to the knowledge discovery process. The principles and guidelines of the ontological engineering have been followed. Reasoning-based techniques are also presented in the design of the ontology to improve the quality of targeted tasks for data integration. The developed ontology is evaluated with a validation process and also a quality verification method.",
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AU - Say, Zeynep

AU - Fathalla, Said

AU - Vahdati, Sahar

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AU - Auer, Sören

N1 - Funding Information: This work has been supported by ERC project ScienceGRAPH no. 819536, and the EPSRC grant EP/M025268/1, the WWTF grant VRG18-013, the EC Horizon 2020 grant LAMBDA (GA no. 809965), the CLEOPATRA project (GA no. 812997), and the German national funded BmBF project MLwin.

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N2 - The network of scholarly publishing involves generating and exchanging ideas, certifying research, publishing in order to disseminate findings, and preserving outputs. Despite enormous efforts in providing support for each of those steps in scholarly communication, identifying knowledge fragments is still a big challenge. This is due to the heterogeneous nature of the scholarly data and the current paradigm of distribution by publishing (mostly document-based) over journal articles, numerous repositories, and libraries. Therefore, transforming this paradigm to knowledge-based representation is expected to reform the knowledge sharing in the scholarly world. Although many movements have been initiated in recent years, non-technical scientific communities suffer from transforming document-based publishing to knowledge-based publishing. In this paper, we present a model (PharmSci) for scholarly publishing in the pharmaceutical research domain with the goal of facilitating knowledge discovery through effective ontology-based data integration. PharmSci provides machine-interpretable information to the knowledge discovery process. The principles and guidelines of the ontological engineering have been followed. Reasoning-based techniques are also presented in the design of the ontology to improve the quality of targeted tasks for data integration. The developed ontology is evaluated with a validation process and also a quality verification method.

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