Details
| Originalsprache | Englisch |
|---|---|
| Titel des Sammelwerks | Proceedings - DCC 2022 |
| Untertitel | 2022 Data Compression Conference |
| Herausgeber/-innen | Ali Bilgin, Michael W. Marcellin, Joan Serra-Sagrista, James A. Storer |
| Herausgeber (Verlag) | Institute of Electrical and Electronics Engineers Inc. |
| Seiten | 399-408 |
| Seitenumfang | 10 |
| ISBN (elektronisch) | 9781665478939 |
| ISBN (Print) | 978-1-6654-7894-6 |
| Publikationsstatus | Veröffentlicht - 2022 |
| Veranstaltung | 2022 Data Compression Conference, DCC 2022 - Snowbird, USA / Vereinigte Staaten Dauer: 22 März 2022 → 25 März 2022 |
Publikationsreihe
| Name | Data Compression Conference Proceedings |
|---|---|
| Band | 2022-March |
| ISSN (Print) | 1068-0314 |
Abstract
The study of three-dimensional folding of chromosomes is important to understand genomics processes. This is done through techniques, such as Hi-C, that analyze the spatial organization of chromosomes in a cell. The data coming from the study is a 2-dimensional quantitative maps with genomic coordinate systems. We present a novel approach called Contact Matrix Compressor(CMC) for the efficient compression of Hi-C data. By exploiting the properties of the data, such as diagonally dominant and symmetrical, CMC achieves a much higher compression. CMC outperforms the existing method Cooler, and also the generic compression methods LZMA as well as BZip2.
ASJC Scopus Sachgebiete
- Informatik (insg.)
- Computernetzwerke und -kommunikation
Zitieren
- Standard
- Harvard
- Apa
- Vancouver
- BibTex
- RIS
Proceedings - DCC 2022: 2022 Data Compression Conference. Hrsg. / Ali Bilgin; Michael W. Marcellin; Joan Serra-Sagrista; James A. Storer. Institute of Electrical and Electronics Engineers Inc., 2022. S. 399-408 (Data Compression Conference Proceedings; Band 2022-March).
Publikation: Beitrag in Buch/Bericht/Sammelwerk/Konferenzband › Aufsatz in Konferenzband › Forschung › Peer-Review
}
TY - GEN
T1 - Contact Matrix Compressor
AU - Adhisantoso, Yeremia Gunawan
AU - Ostermann, Jorn
PY - 2022
Y1 - 2022
N2 - The study of three-dimensional folding of chromosomes is important to understand genomics processes. This is done through techniques, such as Hi-C, that analyze the spatial organization of chromosomes in a cell. The data coming from the study is a 2-dimensional quantitative maps with genomic coordinate systems. We present a novel approach called Contact Matrix Compressor(CMC) for the efficient compression of Hi-C data. By exploiting the properties of the data, such as diagonally dominant and symmetrical, CMC achieves a much higher compression. CMC outperforms the existing method Cooler, and also the generic compression methods LZMA as well as BZip2.
AB - The study of three-dimensional folding of chromosomes is important to understand genomics processes. This is done through techniques, such as Hi-C, that analyze the spatial organization of chromosomes in a cell. The data coming from the study is a 2-dimensional quantitative maps with genomic coordinate systems. We present a novel approach called Contact Matrix Compressor(CMC) for the efficient compression of Hi-C data. By exploiting the properties of the data, such as diagonally dominant and symmetrical, CMC achieves a much higher compression. CMC outperforms the existing method Cooler, and also the generic compression methods LZMA as well as BZip2.
UR - http://www.scopus.com/inward/record.url?scp=85134401511&partnerID=8YFLogxK
U2 - 10.1109/DCC52660.2022.00048
DO - 10.1109/DCC52660.2022.00048
M3 - Conference contribution
AN - SCOPUS:85134401511
SN - 978-1-6654-7894-6
T3 - Data Compression Conference Proceedings
SP - 399
EP - 408
BT - Proceedings - DCC 2022
A2 - Bilgin, Ali
A2 - Marcellin, Michael W.
A2 - Serra-Sagrista, Joan
A2 - Storer, James A.
PB - Institute of Electrical and Electronics Engineers Inc.
T2 - 2022 Data Compression Conference, DCC 2022
Y2 - 22 March 2022 through 25 March 2022
ER -